FastQCFastQC Report
Wed 31 May 2023
EGAF00007943062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482357
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29020.601629083852831No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17190.35637505001482306No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16570.3435214996361616No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14920.3093144704026271No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12890.26722945867894526No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12430.2576929535592932No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12410.25727832290191704No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11870.24608329515276028No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9590.1988154002118763No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9020.18699842647665527No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9010.18679111114796718No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8880.18409601187502203No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7740.16046206440458002No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7570.15693770381688252No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7410.1536206585578731No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6540.13558422496200948No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5950.12335262056941228No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4830.10013330375634644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)