FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454694
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47061.0349817679582314No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35210.774366936885026No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21950.4827422398360216No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA20150.44315517688819295No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19910.43787690182848243No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19280.4240214297967424No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16020.35232486023567494No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15830.34814622581340415No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT15150.33319111314422445No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13450.2958033314712752No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11230.2469792871689532No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10900.23972165896185127No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10870.23906187457938746No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10470.23026474947987No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9990.219708199360449No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9970.21926834310547313No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9860.21684913370310582No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9450.2078320804761004No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8420.1851794833448429No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8030.17660228637281336No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7430.16340659872353713No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7340.1614272455761457No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6740.14823155792686948No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6240.13723515155247265No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5420.11920104509846183No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5350.11766154820604627No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5240.11524233880367896No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5210.11458255442121515No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG5170.1137028419112634No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5010.11018399187145642No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4760.10468578868425799No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4730.10402600430179418No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4680.10292636366435448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)