FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424086
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25620.6041227486877662No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23860.5626217323844692No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21880.5159330890432601No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21550.5081516484863919No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18840.4442495154284744No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18400.43387426135265017No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17800.4197261876128898No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16290.384120202034493No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16220.382469593431521No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15650.36902892337874865No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15340.36171908527987245No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14720.34709940908212017No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14400.33955376975424795No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12810.3020613743438831No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC12180.2872058969171347No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10770.25395792362869796No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9440.22259636017222922No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8980.21174950363841297No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8610.20302485816556076No Hit
ACGCAGACCGGTCACCATGCGCAGCTTTGCAGAACGTACGTATT8220.19382861023471654No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7780.1834533561588923No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7670.18085954263993623No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7610.1794447352659602No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7510.17708672297600014No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7050.1662398664421839No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6800.16034483571728378No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6670.15727941974033569No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6200.1461967619775234No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6180.1457251595195314No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6170.14548935829053541No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5930.13983012879463128No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5920.13959432756563528No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5650.13322769438274312No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5610.1322844894667591No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5570.13134128455077507No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5470.12898327226081502No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT4910.11577840343703873No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4890.11530680097904669No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT4860.11459939729205869No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG4810.11342039114707865No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4750.11200558377310263No Hit
ACCCAGCGGGATGGCCGGCAGAGAATAGCCATCCGGAAAAACGG4730.11153398131511061No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4650.10964757148314258No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4400.10375254075824243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)