FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439470
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26340.5993583179739231No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19540.4446264818986506No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18700.4255125492069993No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18690.42528500238924155No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17730.40344050788449726No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17540.3991171183470999No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14010.31879309167861286No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11990.27282863449154665No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10750.24461282908958518No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9830.22367852185587184No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9380.21343891505677293No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9300.2116185405147109No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8860.20160648053336974No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG8660.19705554417821466No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6950.1581450383416388No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6900.15700730425285003No Hit
AGAGTTACCGTTGCGTACGCCTTTTGCGGAACGGTTACGCAGCA6710.1526839147154527No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6710.1526839147154527No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5990.13630054383689444No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5430.12355792204246023No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5380.12242018795367146No Hit
ACGACCGGAGTCATCACCGGAAGTAGAGCTGTCACGCTGGCGCG5250.11946207932282066No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5180.1178692515985164No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5060.11513868978542335No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4920.1119530343368148No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4500.10239606799098913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)