FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439470
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41830.9518283386806835No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34880.7936833003390449No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21630.49218376681002113No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG20450.4653332423146062No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19730.4489498714360479No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19430.4421234669033154No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19280.43871026463694907No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18760.42687783011354585No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15250.3470088970805743No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12840.2921701140009557No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11660.26531958950554074No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11010.25052904635128675No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9300.2116185405147109No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA8770.19955855917354995No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8620.19614535690718365No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8090.1840853755660227No Hit
ATGGCATCCACCACCCCGATCACCATGGAAG7660.1743008624024393No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7110.16178578742576283No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG6870.15632466379957677No Hit
AAGCAGCGTGGCCCGATCCCAGAAGGTCTGG6590.14995335290235967No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5800.13197715429949713No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5780.13152206066398162No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5590.1271986711265843No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5470.12446810931349124No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5420.1233303752247025No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5030.11445604933215008No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4440.10103078708444263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)