FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421587
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT38730.9186715909171772No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11920.28274116611755107No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG10640.25237969861499526No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7970.18904757499638272No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7150.16959725987755792No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6830.16200689300191895No Hit
AACATCGTGACGTTTGTTACCGGTAGTGGAGACGGCGGTGGTCG6800.1612952961073278No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6780.16082089817760034No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5460.12951063481558966No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5340.12666424723722505No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5240.12429225758858788No Hit
GTCTGCACCGTTTGCACCGGTAGCGTGATAATTCCACGCAAAGT5230.12405505862372417No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4760.11290670727512944No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4290.10175835592653475No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4260.10104675903194359No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)