FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421587
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT38330.9091836323226286No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12890.30574946570933165No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12090.28677354852023423No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG11750.27870878371486785No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA9350.22178103214757572No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8460.20067032427470485No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7680.18216880501533492No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7160.1698344588424216No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7040.16698807126405701No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6440.15275613337223395No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5620.13330581825340915No Hit
TCCGAAGCGGATCTGAACAAAGCGAGCCTGG5490.13022223171018082No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5330.12642704827236134No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5260.12476665551831533No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5200.123343461729133No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4720.11195791141567459No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4650.11029751866162855No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4610.10934872280217368No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4360.10341874868058076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)