FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435963
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT72721.6680314613854847No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22460.5151813341957918No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20560.47159965409908644No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19270.4420099870860601No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13910.3190637737606173No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13080.300025460876267No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12580.28855659769292347No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10240.23488231799487572No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10220.23442356346754195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9800.2247897183935334No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9510.21813777774719414No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9130.20942144172785304No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8010.18373118819716353No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7680.1761617384961568No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7370.16905104332248377No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7300.1674454024768157No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7090.16262847993981142No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6500.14909522138346604No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6270.143819544319128No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6070.13923199904579056No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6020.13808511272745622No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5940.13625009461812126No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5880.13487383103612005No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5770.13235068113578446No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5760.1321213038721176No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5690.13051566302644949No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5390.12363434511644338No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5260.12065244068877405No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5210.1195055543704397No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5200.11927617710677282No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5080.11652364994277037No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5040.11560614088810289No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4670.10711918213242867No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4560.10459603223209309No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4430.10161412780442378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)