FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427660
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26360.6163774961417949No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19710.46088013842772296No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18490.43235280362905115No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC15280.3572931768227096No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15100.35308422578684No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14230.3327409624468035No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13370.31263152971987096No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12000.28059673572464106No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10430.24388532946733385No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10230.23920871720525652No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10070.23546742739559462No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8270.1933779170368985No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6640.15526352710096805No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5400.12626853107608849No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5020.11738296777814151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)