FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388249
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA33330.858469693418399No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22960.5913730621328065No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20410.5256935626363494No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19760.5089517294313701No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10060.25911206468014086No Hit
CAGCGCTTCCACCTCGCGAGAAACTGCATCAGTGAAGCCGGTGC9030.23258269821686597No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC8320.21429546502373478No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7570.1949779651718356No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7340.18905393188391986No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6170.15891863211495716No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6150.15840349878557317No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5750.1481008321978936No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5710.14707056553912565No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5560.14320706556874582No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4890.1259500990343826No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4840.12466226571092263No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4670.12028363241115882No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4620.11899579908769888No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4530.11667769910547096No Hit
GGATTCCTTCAGCAGGTTCACCTGTTCGCAGATCTGGTTGGTAA4480.11538986578201102No Hit
TTCGCAAATCTGGTTGGTGAAACCGGAGCCAAACGCGTTGCCCA4370.11255663247039915No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4320.11126879914693921No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4260.10972339915878727No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG3960.10199639921802761No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG3940.10148126588864362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)