FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393506
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17770.4515814244255488No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16850.42820185715084397No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12850.32655156465212726No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12610.3204525471022043No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9810.2492973423531026No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8980.2282049066596189No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7550.19186492709132769No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7540.1916108013600809No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7480.19008604697260018No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6080.15450844459804933No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5340.13570314048578674No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4970.12630048842965544No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4800.12198035099846No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4430.1125776989423287No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG4130.10495392700492497No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4010.10190441822996346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)