FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393506
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50251.2769817995151282No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33550.852591828332986No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25250.641667471398149No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16300.4142249419322704No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14800.37610608224525166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10840.2754722926715222No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7590.19288143001631486No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7400.18805304112262583No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6490.16492759957916778No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5570.14154803230446297No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5230.13290775744207203No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4690.11918496795474529No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4120.10469980127367816No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4050.10292092115495063No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4030.10241266969245703No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG3960.10063378957372951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)