FastQCFastQC Report
Wed 31 May 2023
EGAF00007943090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457429
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22440.49056793513310265No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21870.47810698490913345No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18160.39700150187242167No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG13460.294253315815132No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12310.2691128022053696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10380.22692046197333357No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10010.21883177498584477No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6270.13707045246366104No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5960.13029344444711638No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5260.11499052311943493No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5110.11171132569207462No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4880.10668322297012213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)