FastQCFastQC Report
Wed 31 May 2023
EGAF00007943092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465952
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23700.5086360826866287No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18190.3903835588215095No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14910.3199900418927272No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG13610.29209017237827073No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11720.2515280543918687No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10970.2354319758258361No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10530.22598894306709705No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6550.1405724194766843No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5990.12855401414738No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5410.11610638005631481No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5230.11224332120046701No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4940.10601950415493441No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4790.10280028844172791No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4680.10043953025204314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)