FastQCFastQC Report
Sun 21 May 2023
EGAF00007943094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394594
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAAC20520.5200281808643822No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20350.515719955194453No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18630.47213084841634695No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15460.39179511092413977No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14710.3727882329685702No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13440.34060325296380584No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13150.3332539268209856No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC13040.3304662513875021No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12530.3175415743777148No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12460.31576759910186164No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12400.3142470488654161No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12150.30791142288022627No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC12060.3056305975255579No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG11030.27952781846657576No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10400.2635620409838974No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10140.2569729899592999No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9350.23695241184610005No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8180.20730168223541157No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7680.1946304302650319No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7610.19285645498917875No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7500.19006877955569523No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7210.182719453412875No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6950.17613040238827757No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6740.1708084765607181No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6700.16979477640308774No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6660.16878107624545735No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6080.15408242395981694No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5580.14141117198943726No Hit
GGTGAACTGGCTGCATCTGCGGCATCCCTGA5450.13811664647713853No Hit
TTCGGTGCACTGTACAGCGGTCGTATCGCTG5430.13760979639832335No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5280.13380842080720942No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5160.13076732033431832No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4920.12468511938853606No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC4710.1193631935609766No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4230.1071987916694121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)