FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400544
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58621.463509626907406No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35950.8975293600703044No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC32490.8111468402971957No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG26440.6601022609251418No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG25740.6426260286011025No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24430.6099205081089718No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC17140.42791803147719104No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16650.4156846688503635No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15020.3749900135815291No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13080.32655588399776303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12230.3053347447471439No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11840.2955979867380363No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11730.2928517216585444No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9630.24042302468642646No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9540.23817608053047856No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7960.1987297275705041No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7470.1864963649436766No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6740.16827115123432132No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6420.16028201645761764No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5940.14829831429256213No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5820.14530238875129822No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5780.14430374690421027No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5390.13456698889510266No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5160.12882479827434687No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG4740.1183390588799233No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4480.11184788687385155No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4220.10535671486777982No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4130.10310977071183192No Hit
GCGGACATCCCATACAAAGTGGAGCCGAACT4130.10310977071183192No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4060.10136214747942798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)