FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences361092
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11320.31349351411828563No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6350.1758554606582256No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6030.1669934531919843No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT5100.14123824399322057No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5070.14040743079326046No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5020.13902274212666024No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT4980.1379149911933801No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4630.12822217052717869No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4040.11188284426129629No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA3740.10357471226169507No Hit
ACGCAGAATGGAGGTCGGGGTGGAACGGTCAGACTGCGGTGGAG3650.10108227266181471No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)