FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences361092
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53351.4774628072624152No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10740.29743112558572327No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6600.18277890399122662No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6080.16837814185858452No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5440.15065412692610194No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5410.14982331372614183No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4960.13736111572673998No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA4850.13431480066021956No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4560.12628360639393837No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4300.11908322532761734No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4160.11520609706113677No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3960.10966734239473597No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3920.10855959146145581No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC3750.10385164999501512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)