FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences358074
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52071.4541686913878136No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27760.7752587453989958No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12640.3529996592883035No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10310.28792931070114No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9260.2586057630545641No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7670.21420153376117784No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7290.2035892022319409No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6840.19102196752626552No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6410.17901327658528685No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5970.16672531376195981No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5650.1577886135268129No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4580.12790652211554038No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4470.12483453140970861No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3710.10360986835123466No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT3680.10277205270418964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)