FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373817
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC30670.8204549284810483No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT27510.7359215873007381No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25300.6768017505891921No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21740.5815679864746655No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA21250.5684599683802503No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16920.4526278901173569No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13810.3694321018038238No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10530.2816886337432487No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9500.2541350446876413No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9500.2541350446876413No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8960.23968947372644905No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8670.2319316670991421No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7410.19822533485636018No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC7260.19421267625602903No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT6320.1690666823606203No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5700.15248102681258477No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5650.1511434739458077No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5380.14392068846521158No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5350.14311815674514536No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5240.14017554043823582No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5010.13402279725106137No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4900.13108018094415183No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4870.13027764922408558No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4860.1300101386507302No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4760.12733503291717604No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4700.12572996947704357No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4610.12332237431684487No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4600.12305486374348945No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4490.12011224743657993No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4330.11583207826289335No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4120.1102143562224297No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG3940.10539916590203227No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT3940.10539916590203227No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA3900.10432912360861064No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT3820.10218903902176735No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG3770.10085148615499026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)