FastQCFastQC Report
Wed 31 May 2023
EGAF00007943105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372544
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT39591.0626932657618966No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC37391.003639838515719No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT32430.8705012025425184No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA25810.6928040714653839No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20200.542217831987631No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16850.4522955677718605No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16350.4388743343068201No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC15130.4061265246521216No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15110.40558967531351997No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC13670.36693652293420376No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13340.3580785088472771No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13100.3516363167840577No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT12680.3403624806734238No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA12370.3320413159250988No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11700.3140568630819447No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA11660.31298316440474144No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11340.3043935749871156No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC10690.2869459714825631No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10610.2847985741281567No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10370.2783563820649373No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGTGAC10040.26949836797801063No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9700.2603719292217832No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9560.2566139838515719No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8510.2284293935749871No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8380.22493987287407663No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8310.22306090018897096No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8220.2206450781652637No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8040.21581343411784917No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC7610.20427117333791442No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7560.2029290499914104No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7200.19326576189658135No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7060.18950781652637005No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT7050.18923939185706923No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7000.18789726851056518No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6900.1852130218175571No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6700.17984452843154097No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT6510.17474445971482563No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6510.17474445971482563No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6290.16883911699020787No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5990.16078637691118364No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5920.158907404226078No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5900.15837055488747637No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5900.15837055488747637No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5810.15595473286376912No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5660.15192836282425698No Hit
GTCAGTGCCGAAGGACTGACGCAGCTTGGTGCGAACCTGGTTTG5640.15139151348565538No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5500.1476335681154441No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG5440.14602302009963924No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5390.1446808967531352No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5280.1417282253908263No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5170.13877555402851743No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5080.13635973200481016No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5050.13555445799690774No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4930.13233336196529805No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4840.1299175399415908No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4820.12938069060298918No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4750.12750171791788353No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4680.12562274523277786No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4350.11676473114585123No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC4350.11676473114585123No Hit
CGGGCCTTCACCTGGATCGTCCGCCGGACCCTGTTCGATAGCAC4350.11676473114585123No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4210.11300678577563994No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4180.1122015117677375No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT4130.11085938842123345No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4130.11085938842123345No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4130.11085938842123345No Hit
ACCACCGCCACCACCGCCGCCGTCCGGGCCCTCAGCTTCACCTT3930.1054908950352173No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT3860.10361192235011166No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG3800.10200137433430682No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT3740.10039082631850198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)