FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473531
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31360.6622586483250305No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30420.6424077832285532No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27690.5847558026824009No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21920.46290527969657747No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15990.3376758860560344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14190.2996635911904395No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14130.2983965146949197No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13270.2802350849258021No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13200.2787568290143623No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12710.2684090376342837No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12170.2570053491746052No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11670.2464463783786067No Hit
GAACCGATCTACGCTACCATCGACGACCTGG9320.1968192156374134No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA8740.18457080951405505No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8340.1761236328772562No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8290.17506773579765633No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7290.15394979420565919No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7130.15057092355093965No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6880.14529143815294035No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6700.14149020866638087No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6560.13853369684350128No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6520.1376889791798214No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5610.11847165233110399No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5280.11150273160574493No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5000.10558970795998572No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4910.10368909321670598No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4910.10368909321670598No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4850.10242201672118614No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4770.10073258139382639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)