FastQCFastQC Report
Wed 31 May 2023
EGAF00007943112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449202
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58381.2996380247639148No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29220.6504868633710447No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28560.6357941416111237No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26220.5837017644623131No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14090.31366734787467554No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13950.3105507099256014No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12950.28828901028935755No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12630.28116526640575956No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12460.2773807774675981No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11740.26135235372950255No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11510.25623216281316646No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10710.23842280310417138No Hit
GAACCGATCTACGCTACCATCGACGACCTGG8770.19523510580985837No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA8290.18454948998446133No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8000.17809359708995062No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7830.17430910815178918No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7000.1558318974537068No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6550.14581413261739706No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6450.1435879626537727No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6360.14158440968651073No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6170.1373546867556244No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5840.13000832587566397No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5370.11954532704662936No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4840.10774662623942012No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4590.10218120133035917No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4510.10040026535945966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)