FastQCFastQC Report
Wed 31 May 2023
EGAF00007943113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456019
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28960.6350612584124784No Hit
TTCCATGGCTTTAGCAGTGGTAGACGCCAGAACCATACGGTTTT16740.36708996774257213No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12970.2844179738124947No Hit
TTCCATAGCTTTTGCGGTAGTGCTGGCCAGAACCATGCGGTTTT12220.26797129066990627No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12120.26577839958422783No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT10990.2409987303160614No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10840.23770939368754374No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC10050.22038555411068397No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9620.21095612244226664No Hit
CAGGACCATACGGTTTTCGTGACGGATCAGCGGGTTGGTAGTGG9190.20152669077384933No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9010.19757948681962811No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8510.1866150313912359No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8360.1833256947627182No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7970.17477341952857228No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7890.1730191066600295No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7080.15525668886603408No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6760.14823943739186307No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6740.14780085917472735No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6420.14078360770055634No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG6170.13530137998636022No Hit
GGACGGGTGGGTACCGATAGTACGCATGGCCTGCACCATTTGGC6110.13398564533495314No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6050.13266991068354608No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5840.12806483940362134No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5790.12696839386078212No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5720.12543337010080718No Hit
CGGCTTAACCGCGATGGAACGGCGGCGACGACGGCCAGCGTATA5580.12236332258085737No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5490.12038972060374677No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5450.1195125641694754No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5430.1190739859523397No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5140.1127146018038722No Hit
CGGTTTTACCGCGATGGAACGGCGACGACGGCGACCAGCGTAAA4670.10240801370118349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)