FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456019
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59211.298410811830209No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28530.625631826744061No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26830.5883526782875275No Hit
GCTGTTACCACCGAAGTCGCATTCGGTCTGG16510.3620463182455117No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13890.3045925718007364No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG12330.2703834708641526No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC10840.23770939368754374No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10500.230253563996237No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC9950.21819266302500556No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9480.20788607492231684No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8830.19363228286540693No Hit
ATGGGTCTGATCTACAACCGTATGGGCACGG8760.19209725910543202No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8430.18486071852269315No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8220.18025564724276838No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8110.17784346704852208No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7520.16490540964301928No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7180.15744957995171255No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6830.14977446115183796No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6820.14955517204327012No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6750.1480201482832952No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6730.14758157006615952No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6040.13245062157497825No Hit
CCGCTGATTCGTCACGAAAACCGTATGGTTC5930.13003844138073195No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5850.12828412851218918No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5820.12762626118648565No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5740.1258719483179429No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5540.121486166146586No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5470.11995114238661109No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5310.11644251664952557No Hit
GGTGAAATGGGCACCCCGGGTCCTAAAGGTG5280.11578464932382204No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4660.10218872459261566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)