FastQCFastQC Report
Sun 21 May 2023
EGAF00007943117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524419
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18300.3489576083246412No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16290.31062947757422976No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15670.298806870079078No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14830.28278914379532394No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14450.2755430295241019No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13860.2642924836819413No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9800.18687347331046358No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9060.17276261920334693No Hit
CTGCAGGGTCGGAGCTGCAATGGCCTGCAGAACGATACGACCGC8710.16608856658511612No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8640.16475375606146994No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8030.1531218357839819No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7830.1493080914307071No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7220.1376761711532191No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7210.13748548393555535No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6680.1273790613993772No Hit
GGTAGTCATGGACAGATCGGTACCCAGACCGGTGTCAACGTCAG6120.11670057721020786No Hit
GTTTTCCAGCGGACGTGCGGCCAGACCACGACCACGTGGGCCTT5890.11231477120394188No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5750.10964515015664954No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5430.10354315919140991No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5380.10258972310309122No Hit

[OK]Adapter Content

Adapter graph