FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524419
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41570.7926867638281604No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39690.7568375669073775No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31250.5958975551991823No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18420.35124585493660604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15580.29709068512010434No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12330.2351173393793894No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10320.19678920862897797No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10250.1954543981053318No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9920.18916171992242845No Hit
GGTTATTACTTCGATCGCGACGATGTAGCAC8810.1679954387617535No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8470.1615120733611864No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7840.14949877864837086No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7420.14148991550649387No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7330.1397737305475202No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7030.13405311401760805No Hit
AGCCGTCGCCTGGATGACTATTCTCTGGAAC5950.11345889450992432No Hit
GCATCTTCTTCTAGCGGCAGCTCTTCTCGTG5760.10983583737431328No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5420.10335247197374618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)