FastQCFastQC Report
Wed 31 May 2023
EGAF00007943119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences621980
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27370.4400463037396701No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22610.3635165117849449No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA22190.35676388308305734No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18360.2951863403967973No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16900.27171291681404547No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG15620.251133476960674No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG13680.21994276343290783No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13660.2196212096851989No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11740.18875204990514163No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10800.17363902376282195No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9540.15338113765715938No Hit
TTCCAGACGGTCACGGAACAGCTGCAGACCGATGACACGGGAAC8930.14357374835203704No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC8790.14132287211807454No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8130.13071159844367986No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7620.12251197787710216No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7280.11704556416605036No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6910.11109681983343515No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6480.10418341425769317No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6430.10337952988842085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)