FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences621980
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34950.5619151741213544No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28680.461108074214605No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA24530.3943856715650021No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22710.3651242805234895No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20890.33586288948197696No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16740.269140486832374No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC16360.26303096562590433No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC16220.26078008939194186No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16100.25885076690568826No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11650.18730505804045147No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11530.1853757355541979No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10720.17235280877198625No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9710.1561143445126853No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC9570.1538634682787228No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9410.15129103829705134No Hit
CCGTGGCCGGGCCCAGCAGATAACCGCATTC8900.14309141773047365No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8110.13039004469597093No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7210.1159201260490691No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6840.10997138171645392No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6770.10884594359947267No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6610.10627351361780123No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6500.1045049680054021No Hit

[OK]Adapter Content

Adapter graph