FastQCFastQC Report
Wed 31 May 2023
EGAF00007943122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527501
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25210.47791378594542955No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15340.2908051359144343No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13170.2496677731416623No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG12250.23222704791080964No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11250.21326973787727416No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10540.199810047753464No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10000.18957310033535482No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9130.17308024060617894No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9120.1728906675058436No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8970.17004707100081326No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8500.16113713528505158No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8350.15829353878002128No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7970.1510897609672778No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7330.13895708254581507No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7210.13668220534179082No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6830.12947842752904734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6510.12341208831831599No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6210.11772489530825533No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6060.11488129880322501No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6040.1145021526025543No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5310.1006633162780734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5290.10028417007740269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)