FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541244
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19760.36508487853906924No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12540.2316884806113324No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10740.19843176090635645No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG10470.19344325295061007No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9460.17478253800504023No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8530.15759989949080266No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8060.1489162004567256No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7740.14300389473139655No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT7690.1420800969618139No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6170.11399664476650088No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6090.11251856833516861No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6090.11251856833516861No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5870.10845385814900489No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)