FastQCFastQC Report
Sun 21 May 2023
EGAF00007943124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541244
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22030.40702529727812226No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20150.37229050114181406No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12960.2394483818758268No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10960.20249647109252022No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG10630.1963994058132746No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9890.18272719882345118No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9630.1779234504216213No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9300.1718263851423757No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8790.1624036478926325No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8640.15963225458388453No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8410.15538278484380427No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6730.12434317978582672No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6690.1236041415701606No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6620.12231082469274486No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6260.11565948075174969No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5790.10697578171767262No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5650.10438914796284116No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5520.10198727376192623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)