FastQCFastQC Report
Sun 21 May 2023
EGAF00007943126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525705
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42910.8162372433208739No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21130.40193644724703015No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19390.3688380365414063No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13050.2482380802921791No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG10150.19307406244947262No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9960.18945986817701943No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9230.17557375334075193No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9120.17348132507775274No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8110.15426902920839633No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8030.15274726319894236No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7810.14856240667294396No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6560.12478481277522564No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6520.12402392977049867No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6230.11850752798622802No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6180.1175564242303193No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6060.11527377521613834No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5600.10652362066177799No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5290.10062677737514385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)