FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514672
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17650.3429368607579196No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16360.3178723536543663No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13710.2663832499145086No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8860.17214847514533527No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8250.1602962663599341No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8180.15893617682718314No Hit
ACGGGTCACCAGGGTACCGGACGCTTTAGTGTACGCTTCGGCGT6360.12357384897565829No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5740.11152734168557837No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5660.10997295364814873No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5440.10569838654521715No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)