FastQCFastQC Report
Wed 31 May 2023
EGAF00007943128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514672
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43960.8541362265676004No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18710.36353250225386263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16320.31709515963565144No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16160.3139863835607921No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14780.2871731899151304No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9680.18808095252898935No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8360.16243354991139988No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG6290.12221375944290733No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5550.10783567009668295No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5440.10569838654521715No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)