FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521602
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18030.3456658525082343No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17050.3268775809908704No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13850.2655281229749886No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9770.18730756400473925No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8540.16372636607988467No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7890.15126475742040865No Hit
ACGGGTCACCAGGGTACCGGACGCTTTAGTGTACGCTTCGGCGT6590.12634154010145668No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5930.11368821438568104No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5840.11196276087898437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)