FastQCFastQC Report
Wed 31 May 2023
EGAF00007943132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534043
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48360.9055450591057274No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13630.2552228940366225No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12770.23911932185236023No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10850.2031671606967978No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9620.18013530745651568No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9160.17152176884632886No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8770.16421898611160524No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8610.16122297268197505No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8190.15335843742919578No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8100.1516731798750288No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7990.14961342064215802No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7470.13987637699585986No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6620.12396005565094945No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6420.12021503886391172No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5420.10148995492872297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)