FastQCFastQC Report
Wed 31 May 2023
EGAF00007943136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559640
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25260.45136158959330996No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15640.27946537059538273No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15560.27803588020870557No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15220.2719605460653277No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11240.2008433993281395No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11100.1983417911514545No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10430.18636980916303336No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9740.17404045457794295No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9620.17189621899792723No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9340.16689300264455723No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9330.16671431634622258No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9260.16546351225788006No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9170.16385533557286827No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9120.16296190408119504No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7610.13598027303266386No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7590.13562290043599456No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6560.11721821170752626No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6050.10810521049245943No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6040.1079265241941248No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5920.10578228861410907No Hit

[OK]Adapter Content

Adapter graph