FastQCFastQC Report
Wed 31 May 2023
EGAF00007943138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences609054
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31710.520643489739826No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27530.45201246523296784No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16060.2636876204737183No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC12150.19948970042065234No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10110.16599513343644406No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7410.1216640888985213No Hit
GCTAACACCCTGAACGGTGAAAACGTACGTA6700.11000666607558607No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6300.10343910392181975No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6290.10327491486797559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)