FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510144
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18130.35538985070881945No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12320.24150043909170743No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9170.17975316773303224No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9120.17877305231464058No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5680.1113411115292937No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5620.1101649730272237No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5110.10016779575962867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)