FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512363
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16460.3212566090837941No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9820.19166099035254303No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8690.1696063142732789No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7350.14345298157751438No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7030.13720740959046615No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6460.12608248448853643No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5800.11320099226524943No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5170.10090502241574821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)