FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529173
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31190.5894102684755269No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA27350.516844207848851No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22140.41838869330067857No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18080.34166520211726603No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17760.33561803039837634No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17730.33505110804973043No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16940.3201221528687216No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15150.2862957860661825No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14340.270988882652743No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13970.2639968403527769No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13770.26021735802847085No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13600.25700479805281073No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13590.2568158239365954No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12590.2379184123150652No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11150.2107061395800617No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11030.2084384501854781No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10750.20314717493144963No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9620.18179309979912053No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9430.17820259159102977No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG9120.1723443939883554No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8880.16780901519918817No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8820.16667517050189634No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8660.16365158464245153No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8540.16138389524786792No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8150.1540139047154711No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8080.152691085901964No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7890.14910057769387328No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7090.1339826483966491No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7090.1339826483966491No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6640.12547881316696052No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6410.12113240849400857No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGG6310.11924266733185555No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5560.10506960861570791No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5460.1031798674535549No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)