FastQCFastQC Report
Sun 21 May 2023
EGAF00007943148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531681
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG23540.44274668457214006No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22530.4237503314957653No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14140.2659489430692464No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG14040.2640681160319816No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13050.24544792836305981No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12410.2334106353245649No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11960.2249469136568732No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11660.21930443254507873No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10150.19090394428237983No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8210.1544158997594422No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7630.14350710294330624No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7330.13786462183151177No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6760.12714390771910225No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5840.10984029897626583No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5650.10626672760546266No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5500.10344548704956542No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5460.10269315623465951No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5350.10062424649366819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)