FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501339
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28270.563889902840194No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15530.3097704347756708No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG14590.29102064670811567No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13350.2662868837253834No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10820.2158220286073894No Hit
GGTCTCACCCGGGTAGAAAGAACCACCTTTCGGCGGTACAACCA10280.20505087376007053No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10030.2000642279974229No Hit
CAGCTGCTGCAGCGGGGTAGTTTCGCCCGGATAGATAGAACCAC9690.19328238976022213No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9220.18390749572644458No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8820.17592886250620837No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8630.17213901172659618No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8590.17134114840457257No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8270.1649582418283836No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8190.16336251518433634No Hit
GGACACCTGCTGTGGAGAAGTAACGCTCGGGTAATAACGTTTCA8150.16256465186231273No Hit
CAGGGCTGGGATGCCCCAGAAAATCATCTGCTGCAGCTGCTGAG7740.1543865528115706No Hit
GGTTTCGCCCGGGTAGAAGCTACCACCTTTTGGCGGAACAACGG7430.14820311206588754No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7410.14780418040487575No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6840.13643462806603915No Hit
GGTCTCGCCCGGGTAGAAAGAGCCACCTTTCGGTGGAACTACGG6760.1348389014219919No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6730.13424050393047418No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6700.1336421064389565No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6580.13124851647288563No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6450.12865546067630884No Hit
CAGTTGCTGCAGCGGAGTGGTTTCACCCGGGTAGATGGAACCGC6380.1272591998627675No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6270.12506507572720255No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6170.1230704174221435No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG5990.1194800324730372No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5890.11748537416797816No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5470.10910780928673014No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5320.10611582182914155No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5320.10611582182914155No Hit
GTAATAGCTACCCTGGTGCGGGGAGGTGACAGACGGGTAATAAC5160.10292436854104708No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5110.10192703938851755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)