FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501339
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28620.5708712069079007No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21920.4372291004689442No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16070.3205415896229896No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14350.28623346677597394No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG13040.26010344297970034No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11070.22080867437003707No Hit
CTGCAGGAACACTCCCTGAAGGCGTGTCGTC10980.21901348189548392No Hit
TCCACCGGCCTGCAGATGCGTTGTTGCCAGC9820.19587544555679887No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9290.18530375653998593No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9290.18530375653998593No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9240.1843064273874564No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8870.1769261916587379No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8710.17373473837064343No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8430.1681496951164781No Hit
GCAGGTCAATACGAACAGCAGATTGTTGTAC8390.16735183179445445No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8290.1653571734893954No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7760.15478548447258242No Hit
CGCGACGTGAGCCCGGGTTGCCGTCCGATCA7670.15299029199802927No Hit
CTGCAAGAGCGCGAACTGGAAGCATGTCGTC7600.15159403118448794No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7580.15119509952347612No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC7520.14999830454044072No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7270.14501165877779307No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7150.1426180688117222No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7100.1416207396591927No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6730.13424050393047418No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6710.1338415722694624No Hit
CTGCAGGAACGTGAACTGGAAGCCTGCCGTC6610.13184691396440334No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6480.12925385816782656No Hit
TCTACCGGCCTGCAGATGCGTTGCTGTCAGC6440.12845599484580295No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6270.12506507572720255No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA6200.12366881491366122No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5850.11668751084595454No Hit
CAACACGAACAGCAGACCGTGGTTCCGCCAA5780.11529125003241321No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5700.11369552338836597No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5560.11090300176128329No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG5410.1079110143036947No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5330.10631528765964746No Hit
GTCGCCGGTCAGTACGAACAGCAGATCGTGG5090.10152810772750574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)