FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510462
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18740.36711841429920344No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16780.3287218245432569No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15600.30560551030243194No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13020.2550630605216451No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12300.240958190815379No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10840.21235664946656166No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9970.1953132652381568No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9680.18963213716202187No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG9140.17905348488232228No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9130.1788575839141797No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9090.17807398004160935No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9070.1776821781053242No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8960.17552726745575575No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8900.17435186164690028No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8730.17102154518847634No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8180.16024699194063416No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7930.15534946773706956No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7610.14908063675650685No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7140.13987329125380538No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7040.13791428157237953No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6650.13027414381481872No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6580.12890283703782063No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6460.12655202542010963No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6340.12420121380239861No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6120.11989139250326175No Hit
GACTTCACGAACACGAATGGTGATCTCACCTTCTTCCACAACGG5800.11362256152269905No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5720.11205535377755836No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5550.10872503731913442No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5310.10402341408371239No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5210.10206440440228655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)