FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510462
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36620.7173893453381447No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17160.3361660613326751No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16170.3167718654865592No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13240.25937288182078194No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11360.22254349980997604No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11040.21627466882941337No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10740.21039763978513581No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9900.19394195846115872No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9730.19061164200273478No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9590.1878690284487386No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9530.1866936226398831No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9530.1866936226398831No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG9410.18434281102217207No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9310.18238380134074625No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9280.18179609843631847No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9250.18120839553189072No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9040.17709447520089644No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9030.17689857423275387No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9000.1763108713283261No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8310.16279370452648775No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8020.15711257645035281No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7410.14516261739365516No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7370.14437901352108484No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7140.13987329125380538No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7020.13752247963609435No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6250.12243810508911536No Hit
TCCGGCGACGAAGTTCGCATCCACATGGGCA5950.11656107604483781No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5900.11558157120412488No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5680.11127174990498802No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5490.10754963151027891No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5460.10696192860585117No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA5370.10519881989256791No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5320.104219315051855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)