FastQCFastQC Report
Wed 31 May 2023
EGAF00007943154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494555
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17200.34778740483869336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13760.2782299238709547No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8510.17207388460333028No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8310.16802984501218268No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7770.15711093811608415No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7600.1536735044636087No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6620.13385771046698547No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6570.1328467005691986No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5750.11626613824549342No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5680.11485072438859176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)