FastQCFastQC Report
Wed 31 May 2023
EGAF00007943155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502540
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC19440.3868348788156167No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11390.2266486249850758No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10280.20456083097862857No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9750.19401440681338797No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG9720.19341743940780834No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8590.17093166713097466No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG8580.17073267799578143No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC8520.16953874318462211No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7310.1454610578262427No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT7200.1432721773391173No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7090.1410832968519919No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6880.1369045250129343No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6820.135710590201775No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6440.1281490030644327No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT6350.12635810084769372No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6020.1197914593863175No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG5880.11700561149361245No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5690.11322481792494131No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5460.10864806781549728No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5380.10705615473395154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)