FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502540
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22290.44354678234568395No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG19320.38444700919329805No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG15360.30564731165678355No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10770.21431129860309625No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG10520.20933657022326582No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9650.1920245154614558No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9560.19023361324471683No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9150.18207505870179488No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9060.1802841564850559No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8800.17511043897003226No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7600.151231742746846No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG7460.14844589485414095No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7190.14307318820392406No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7050.140287340311219No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6890.13710351414812752No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6590.13113384009233095No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6520.12974091614597844No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6510.1295419270107852No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6330.12596012257730727No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6090.12118438333267004No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6040.12018943765670395No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5760.11461774187129382No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5460.10864806781549728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)